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AutoDock Vina is a new program for drug discovery, molecular docking and virtual screening. AutoDock Vina - Tutorial · AutoDock Vina - Manual AutoDock Vina Manual. Contents. ○. Features. ○ AutoDock Tools Compatiblity. ○ Ease of Use. ○ Flexible Residues. ○ Accuracy. ○ Speed. Virtual Screening using AutoDock Vina. AutoDock Vina [2] docking employs a gradient-based conformational search approach and defines the search space by a gridDocumentation: vina.scripps.edu/manual.html. Publications and credits. Authors: Oleg Trott. Publications: O. Trott, A. J. Olson, AutoDock Vina The AutoDock Vina tool allows running ligand-receptor docking calculations Please see the AutoDock Vina manual for a description of the output values. AutoDock Vina Documentation, Release 1.2.0. 2. MANUAL AutoDock Vina (Vina) is one of the docking engines in the AutoDock Suite, together with AutoDock4 AUTODOCK(1), General Commands Manual, AUTODOCK(1). NAME¶. vina - docking small molecules against proteins. DESCRIPTION¶. Input:¶.